Journal: BMC Bioinformatics

Article Title: Pegasys: software for executing and integrating analyses of biological sequences

doi: 10.1186/1471-2105-5-40

Figure Lengend Snippet: Diagram showing the client/server model and layering of the Pegasys architecture. Arrows between the layers indicate a transfer of data. The workflow created by manipulating the GUI in the client is sent as a Pegasys DAG XML file to the server. The application layer then processes the XML file, and sends jobs to the job scheduling layer. The analyses are then executed and the results are stored in the database. The adaptor layer takes results stored in the PegasysResultSet data structure in memory in the application layer and can create output in GFF or GAME XML format. This file is then returned to the GUI where it can be digested by the user or input into a visualization tool.

Article Snippet: The core data structure of the Pegasys system is a DAG G(V, E) , consisting of a set of nodes V and a set of edges connecting the nodes E (see Figure ).

Techniques:

Journal: BMC Bioinformatics

Article Title: Pegasys: software for executing and integrating analyses of biological sequences

doi: 10.1186/1471-2105-5-40

Figure Lengend Snippet: Diagram showing an abstract representation of a Pegasys DAG. A): Consider v 1: this could be an input sequence that is used by two sequence analysis programs v 2 and v 3. v 4 is dependent on the output of both v 2 and v 3 and therefore cannot execute until v 2 and v 3 have completed. In this diagram, v 2 and v 3 will be executed in parallel as will v 4 and v 5. B): DAG in the case where v 3 produces two instances of the expected output to v 5. The sub-DAG rooted at v 5 replicates itself ( v 5 a and v 5 b ) for each instance of its input. All of the new sub-DAGs are executed in parallel.

Article Snippet: The core data structure of the Pegasys system is a DAG G(V, E) , consisting of a set of nodes V and a set of edges connecting the nodes E (see Figure ).

Techniques: Sequencing

Journal: Biosensors

Article Title: Towards Lateral Flow Quantitative Assays: Detection Approaches

doi: 10.3390/bios9030089

Figure Lengend Snippet: Manufacturers and models of optical detectors for registering results of immunochromatography (based on [ 19 ], with actualization and additions).

Article Snippet: Hamamatsu , Japan , hamamatsu.com , Immunochromato-Reader C10066 , Colorimetry.

Techniques: Colorimetric Assay, Stripping Membranes, Bioassay, Diagnostic Assay